PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00137319001

Common Name

GSBRNA2T00137319001, LOC106420571, LOC106424349

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YA

Protein Properties

Length: 281aa MW: 31103.1 Da PI: 9.1868

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00137319001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	106.5	2.2e-33	146	202	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF GSBRNA2T00137319001 146 QEPVYVNAKQYQAIMRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 202 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.2E-36	144	205	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	38.024	145	205	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	9.3E-29	147	202	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.8E-24	148	170	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	150	170	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	3.8E-24	179	202	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MQSKSESGNQ IVSEAHHHTS INSLNPWLRA AAACNANSFV EEAGDKSSNG SKSPSNRDEN 60 GNKESQVTTS PQQSAGDYSE KSQELVHTGS TPPPHPQLVS HTVGWASSNP YQDSYYAGMM 120 GAYPLTYVPY GGMPHSRMQL PPEVAQEPVY VNAKQYQAIM RRRQARAKAE LEKKLIKSRK 180 PYLHESRHQH AMRRPRGTGG RFAKKTNTKA SQQKDGEKTT ESPTSSNSDQ PEGCSDEYRT 240 HQSEEMQSSA YKRREEADCS GQQWNNISSN HPSQPLLAIK *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-19	146	202	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.2178	0.0	bud\| flower\| leaf\| microspore\| seed

Cis-element ? help Back to Top
Source	Link
PlantRegMap	GSBRNA2T00137319001

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BNU33884	0.0	U33884.1 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds.
GenBank	BNU33885	0.0	U33885.1 Brassica napus clone bncbf-b2 CCAAT-binding factor B subunit homolog mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013716881.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X4
Refseq	XP_013720562.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X4
Swissprot	Q945M9	1e-142	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A078D4K1	0.0	A0A078D4K1_BRANA; BnaA03g35980D protein
STRING	Bra001806.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13268	18	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	1e-144	nuclear factor Y, subunit A9

Link Out ? help Back to Top
Entrez Gene	106420571 \| 106424349

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]