PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00137319001
Common NameGSBRNA2T00137319001, LOC106420571, LOC106424349
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 281aa    MW: 31103.1 Da    PI: 9.1868
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00137319001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA106.52.2e-33146202158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQyq+I++RRq+Rak+e ekkl +ksrkpylheSRh+hA+rRpRg+gGrF
  GSBRNA2T00137319001 146 QEPVYVNAKQYQAIMRRRQARAKAELEKKL-IKSRKPYLHESRHQHAMRRPRGTGGRF 202
                          69****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-36144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.024145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.3E-29147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-24148170IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MQSKSESGNQ IVSEAHHHTS INSLNPWLRA AAACNANSFV EEAGDKSSNG SKSPSNRDEN  60
GNKESQVTTS PQQSAGDYSE KSQELVHTGS TPPPHPQLVS HTVGWASSNP YQDSYYAGMM  120
GAYPLTYVPY GGMPHSRMQL PPEVAQEPVY VNAKQYQAIM RRRQARAKAE LEKKLIKSRK  180
PYLHESRHQH AMRRPRGTGG RFAKKTNTKA SQQKDGEKTT ESPTSSNSDQ PEGCSDEYRT  240
HQSEEMQSSA YKRREEADCS GQQWNNISSN HPSQPLLAIK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19146202258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.21780.0bud| flower| leaf| microspore| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00137319001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBNU338840.0U33884.1 Brassica napus clone bncbf-b1 CCAAT-binding factor B subunit homolog mRNA, complete cds.
GenBankBNU338850.0U33885.1 Brassica napus clone bncbf-b2 CCAAT-binding factor B subunit homolog mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013716881.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X4
RefseqXP_013720562.10.0PREDICTED: nuclear transcription factor Y subunit A-9-like isoform X4
SwissprotQ945M91e-142NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBLA0A078D4K10.0A0A078D4K1_BRANA; BnaA03g35980D protein
STRINGBra001806.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132681829
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.11e-144nuclear factor Y, subunit A9
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]